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One binary. One grammar. Evidence from the biomedical sources you already trust.
BioMCP cuts through the usual biomedical data maze: one query reaches the sources that normally live behind different APIs, identifiers, and search habits. Researchers, clinicians, and agents use the same command grammar to search, focus, and pivot without rebuilding the workflow for each source. You get compact, evidence-oriented results across live public data plus local study analytics.
- Search the literature:
search articlefans out across PubTator3 and
Europe PMC, deduplicates PMID/PMCID/DOI identifiers, and can add a Semantic Scholar leg when your filters support it.
- Pivot without rework: move from a gene, variant, drug, disease, pathway,
protein, or article straight into the next built-in view instead of rebuilding filters by hand.
- Analyze studies locally:
studycommands cover local query, cohort, survival,
compare, and co-occurrence workflows with native terminal, SVG, and PNG charts for downloaded cBioPortal-style datasets.
- Follow the paper trail:
article citations,article references,
article recommendations, and article entities turn one known paper into a broader evidence map.
- Enrich and batch: use
biomcp enrichfor top-level g:Profiler
enrichment and biomcp batch for up to 10 focused get calls in one command.
This installs the biomcp binary on your PATH.
Works with Claude (desktop and mobile), Cursor, Windsurf, VS Code, and any MCP-compatible AI app.
Category: Developer Tools
Don't lose this
Three weeks from now, you'll want genomoncology/biomcp again. Will you remember where to find it?
Save it to your library and the next time you need genomoncology/biomcp, it’s one tap away — from any AI app you use. Group it into a bench with the rest of the team for that kind of task and you can pull the whole stack at once.
⚡ Pro tip for geeks: add a-gnt 🤵🏻♂️ as a custom connector in Claude or a custom GPT in ChatGPT — one click and your library is right there in the chat. Or, if you’re in an editor, install the a-gnt MCP server and say “use my [bench name]” in Claude Code, Cursor, VS Code, or Windsurf.
a-gnt's Take
Our honest review
This plugs directly into your AI and gives it new abilities it didn't have before. genomoncology/biomcp. Once connected, just ask your AI to use it. It's completely free and works across most major AI apps. This one just landed in the catalog — worth trying while it's fresh.
Tips for getting started
Tap "Get" above, pick your AI app, and follow the steps. Most installs take under 30 seconds.
What's New
Imported from awesome:punkpeye/awesome-mcp-servers
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